After following the installation using the complete installation pack, and installing Morrowind 58 and the morrowind 59 resources patch via Wyre Bash all had went well. I had installed all parts of the installation, and as far as following the installation readme I had done everything (All mods downloaded that make it actually run, ect ect) however I have encountered two problems.
1: When I attempt to load Oblivion to play Morroblivion the main menu has no mouse, nor any options. It's just the map loop and the ''book cover'' outline as default.
2: Whenever I attempt to play Morrowind the in-game experience is rather....ruined. It's simply black, everything is black, I feel as if I'm in the void or something.
So before I continue I do have Morrowind Overhaul 3.0 installed, and it is located in C:\Games\Steam\SteamApps\Common\Morrowind
I moved it to this location as requested (and needed) and simply updated my steam, and everything was to my belief fine prior to installation of Morroblivion, and with that, Oblivion was completely Vannila.
Oblivion is located in C:\Games\Oblivion by the way.
My load order after installing Morroblivion and all it's recommended files is now:

Try Load Order
Try Load Order Oblivion.esm,,Morrowind_ob.esm,,Unofficial Patch for Oblivion,, Shivering Islles,,Morroblivion_Chargen_and_Transport,,
Just these to See if your Game will Run and Visible
User\User Name\Documents (My Documents )\My Games\Oblivion\Oblivion.ini..Delete Oblivion.ini