I'm about 10 hours into a game and for most of it I've noticed a lot of Dunmer hate me. My guy is only in the mages guild and I haven't started the main quest yet.
I finally noticed on one of the Dunmer a make amends option telling me to speak to a master of the temple so I tried that. The only problem is that they say I've already broken their rules twice and I can't make amends. The weird thing is I never joined that faction but I can still join it even though they all hate me.
Is there anyway I can fix this annoying problem? I don't want to join their faction later and find out it's broken to hell because I've been expelled from them twice without ever joining them previously.

I tried fixing it by finding
I tried fixing it by finding the faction id of the Temple in Morroblivion and using these commands.
setpcfactionmurder 01220002 0
setpcfactionsteal 01220002 0
setpcexpelled 01220002 0
However it didn't work.